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Page 1
Perspectives on ENCODE.
ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. Nature. 2020. PMID: 32728248 Free PMC article.
Expanded encyclopaedias of DNA elements in the human and mouse genomes.
ENCODE Project Consortium; Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):699-710. doi: 10.1038/s41586-020-2493-4. Epub 2020 Jul 29. Nature. 2020. PMID: 32728249 Free PMC article.
Cloning-free CRISPR.
Arbab M, Srinivasan S, Hashimoto T, Geijsen N, Sherwood RI. Arbab M, et al. Stem Cell Reports. 2015 Nov 10;5(5):908-917. doi: 10.1016/j.stemcr.2015.09.022. Epub 2015 Oct 29. Stem Cell Reports. 2015. PMID: 26527385 Free PMC article.
Self-Cloning CRISPR.
Arbab M, Sherwood RI. Arbab M, et al. Curr Protoc Stem Cell Biol. 2016 Aug 17;38:5B.5.1-5B.5.16. doi: 10.1002/cpsc.14. Curr Protoc Stem Cell Biol. 2016. PMID: 27532819 Free PMC article.
Cas9 Functionally Opens Chromatin.
Barkal AA, Srinivasan S, Hashimoto T, Gifford DK, Sherwood RI. Barkal AA, et al. PLoS One. 2016 Mar 31;11(3):e0152683. doi: 10.1371/journal.pone.0152683. eCollection 2016. PLoS One. 2016. PMID: 27031353 Free PMC article.
High resolution mapping of enhancer-promoter interactions.
Reeder C, Closser M, Poh HM, Sandhu K, Wichterle H, Gifford D. Reeder C, et al. PLoS One. 2015 May 13;10(5):e0122420. doi: 10.1371/journal.pone.0122420. eCollection 2015. PLoS One. 2015. PMID: 25970635 Free PMC article.
Universal count correction for high-throughput sequencing.
Hashimoto TB, Edwards MD, Gifford DK. Hashimoto TB, et al. PLoS Comput Biol. 2014 Mar 6;10(3):e1003494. doi: 10.1371/journal.pcbi.1003494. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24603409 Free PMC article.
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