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Absence of a simple code: how transcription factors read the genome.
Slattery M, Zhou T, Yang L, Dantas Machado AC, Gordân R, Rohs R. Slattery M, et al. Trends Biochem Sci. 2014 Sep;39(9):381-99. doi: 10.1016/j.tibs.2014.07.002. Epub 2014 Aug 14. Trends Biochem Sci. 2014. PMID: 25129887 Free PMC article. Review.
Evolving insights on how cytosine methylation affects protein-DNA binding.
Dantas Machado AC, Zhou T, Rao S, Goel P, Rastogi C, Lazarovici A, Bussemaker HJ, Rohs R. Dantas Machado AC, et al. Brief Funct Genomics. 2015 Jan;14(1):61-73. doi: 10.1093/bfgp/elu040. Epub 2014 Oct 14. Brief Funct Genomics. 2015. PMID: 25319759 Free PMC article. Review.
GBshape: a genome browser database for DNA shape annotations.
Chiu TP, Yang L, Zhou T, Main BJ, Parker SC, Nuzhdin SV, Tullius TD, Rohs R. Chiu TP, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D103-9. doi: 10.1093/nar/gku977. Epub 2014 Oct 17. Nucleic Acids Res. 2015. PMID: 25326329 Free PMC article.
Deconvolving the recognition of DNA shape from sequence.
Abe N, Dror I, Yang L, Slattery M, Zhou T, Bussemaker HJ, Rohs R, Mann RS. Abe N, et al. Cell. 2015 Apr 9;161(2):307-18. doi: 10.1016/j.cell.2015.02.008. Epub 2015 Apr 2. Cell. 2015. PMID: 25843630 Free PMC article.
13 results