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Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Transforming Big Data into AI-ready data for nutrition and obesity research.
Thomas DM, Knight R, Gilbert JA, Cornelis MC, Gantz MG, Burdekin K, Cummiskey K, Sumner SCJ, Pathmasiri W, Sazonov E, Gabriel KP, Dooley EE, Green MA, Pfluger A, Kleinberg S. Thomas DM, et al. Obesity (Silver Spring). 2024 May;32(5):857-870. doi: 10.1002/oby.23989. Epub 2024 Mar 1. Obesity (Silver Spring). 2024. PMID: 38426232
Greengenes2 unifies microbial data in a single reference tree.
McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. McDonald D, et al. Nat Biotechnol. 2024 May;42(5):715-718. doi: 10.1038/s41587-023-01845-1. Epub 2023 Jul 27. Nat Biotechnol. 2024. PMID: 37500913 Free PMC article.
Inflammatory dietary potential is associated with vitamin depletion and gut microbial dysbiosis in early pregnancy.
Alvernaz SA, Wenzel ES, Nagelli U, Pezley LB, LaBomascus B, Gilbert JA, Maki PM, Tussing-Humphreys L, Peñalver Bernabé B. Alvernaz SA, et al. medRxiv [Preprint]. 2024 Jan 16:2023.12.02.23299325. doi: 10.1101/2023.12.02.23299325. medRxiv. 2024. Update in: Nutrients. 2024 Mar 24;16(7):935. doi: 10.3390/nu16070935 PMID: 38076865 Free PMC article. Updated. Preprint.