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Page 1
Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Slovin S, Carissimo A, Panariello F, Grimaldi A, Bouché V, Gambardella G, Cacchiarelli D. Slovin S, et al. Among authors: cacchiarelli d. Methods Mol Biol. 2021;2284:343-365. doi: 10.1007/978-1-0716-1307-8_19. Methods Mol Biol. 2021. PMID: 33835452
Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culture.
Giobbe GG, Crowley C, Luni C, Campinoti S, Khedr M, Kretzschmar K, De Santis MM, Zambaiti E, Michielin F, Meran L, Hu Q, van Son G, Urbani L, Manfredi A, Giomo M, Eaton S, Cacchiarelli D, Li VSW, Clevers H, Bonfanti P, Elvassore N, De Coppi P. Giobbe GG, et al. Among authors: cacchiarelli d. Nat Commun. 2019 Dec 11;10(1):5658. doi: 10.1038/s41467-019-13605-4. Nat Commun. 2019. PMID: 31827102 Free PMC article.
Combining NGN2 Programming with Developmental Patterning Generates Human Excitatory Neurons with NMDAR-Mediated Synaptic Transmission.
Nehme R, Zuccaro E, Ghosh SD, Li C, Sherwood JL, Pietilainen O, Barrett LE, Limone F, Worringer KA, Kommineni S, Zang Y, Cacchiarelli D, Meissner A, Adolfsson R, Haggarty S, Madison J, Muller M, Arlotta P, Fu Z, Feng G, Eggan K. Nehme R, et al. Among authors: cacchiarelli d. Cell Rep. 2018 May 22;23(8):2509-2523. doi: 10.1016/j.celrep.2018.04.066. Cell Rep. 2018. PMID: 29791859 Free PMC article.
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites.
Schwartz S, Mumbach MR, Jovanovic M, Wang T, Maciag K, Bushkin GG, Mertins P, Ter-Ovanesyan D, Habib N, Cacchiarelli D, Sanjana NE, Freinkman E, Pacold ME, Satija R, Mikkelsen TS, Hacohen N, Zhang F, Carr SA, Lander ES, Regev A. Schwartz S, et al. Among authors: cacchiarelli d. Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26. Cell Rep. 2014. PMID: 24981863 Free PMC article.
TFEB and TFE3 control glucose homeostasis by regulating insulin gene expression.
Pasquier A, Pastore N, D'Orsi L, Colonna R, Esposito A, Maffia V, De Cegli R, Mutarelli M, Ambrosio S, Tufano G, Grimaldi A, Cesana M, Cacchiarelli D, Delalleau N, Napolitano G, Ballabio A. Pasquier A, et al. Among authors: cacchiarelli d. EMBO J. 2023 Nov 2;42(21):e113928. doi: 10.15252/embj.2023113928. Epub 2023 Sep 15. EMBO J. 2023. PMID: 37712288 Free PMC article.
Esrrb guides naive pluripotent cells through the formative transcriptional programme.
Carbognin E, Carlini V, Panariello F, Chieregato M, Guerzoni E, Benvegnù D, Perrera V, Malucelli C, Cesana M, Grimaldi A, Mutarelli M, Carissimo A, Tannenbaum E, Kugler H, Hackett JA, Cacchiarelli D, Martello G. Carbognin E, et al. Among authors: cacchiarelli d. Nat Cell Biol. 2023 May;25(5):643-657. doi: 10.1038/s41556-023-01131-x. Epub 2023 Apr 27. Nat Cell Biol. 2023. PMID: 37106060 Free PMC article.
Single-cell guided prenatal derivation of primary fetal epithelial organoids from human amniotic and tracheal fluids.
Gerli MFM, Calà G, Beesley MA, Sina B, Tullie L, Sun KY, Panariello F, Michielin F, Davidson JR, Russo FM, Jones BC, Lee DDH, Savvidis S, Xenakis T, Simcock IC, Straatman-Iwanowska AA, Hirst RA, David AL, O'Callaghan C, Olivo A, Eaton S, Loukogeorgakis SP, Cacchiarelli D, Deprest J, Li VSW, Giobbe GG, De Coppi P. Gerli MFM, et al. Among authors: cacchiarelli d. Nat Med. 2024 Mar;30(3):875-887. doi: 10.1038/s41591-024-02807-z. Epub 2024 Mar 4. Nat Med. 2024. PMID: 38438734 Free PMC article.
Integrative biology studies in pluripotent stem cells.
Modic M, Cacchiarelli D, Ten Berge D. Modic M, et al. Among authors: cacchiarelli d. Stem Cell Res. 2020 Jan;42:101686. doi: 10.1016/j.scr.2019.101686. Epub 2019 Dec 12. Stem Cell Res. 2020. PMID: 31887610 Free article. No abstract available.
59 results